org.biojava.nbio.structure.align.quaternary

Class QsAlign

java.lang.Object

org.biojava.nbio.structure.align.quaternary.QsAlign

public class QsAlign
extends java.lang.Object

Quaternary Structure Alignment (QS-Align). The algorithm takes as input two protein structures at the quaternary structure level (multiple chains or subunits) and calculates the equivalent subunit matching and a residue-based alignment, together with usual alignment quality scores.

Since:

5.0.0

Author:

Aleix Lafita

Constructor Summary

Constructors

Constructor and Description
QsAlign()

Method Summary

Modifier and Type	Method and Description
static QsAlignResult	align(java.util.List<Subunit> s1, java.util.List<Subunit> s2, SubunitClustererParameters cParams, QsAlignParameters aParams)
static QsAlignResult	align(Structure s1, Structure s2, SubunitClustererParameters cParams, QsAlignParameters aParams)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QsAlign

public QsAlign()

Method Detail

align

public static QsAlignResult align(Structure s1,
                                  Structure s2,
                                  SubunitClustererParameters cParams,
                                  QsAlignParameters aParams)
                           throws StructureException

Throws:

StructureException

align

public static QsAlignResult align(java.util.List<Subunit> s1,
                                  java.util.List<Subunit> s2,
                                  SubunitClustererParameters cParams,
                                  QsAlignParameters aParams)
                           throws StructureException

Throws:

StructureException