Uses of Class
org.biojava.nbio.structure.ResidueRange

Packages that use ResidueRange

Package	Description
org.biojava.nbio.structure
org.biojava.nbio.structure.domain
org.biojava.nbio.structure.ecod
org.biojava.nbio.structure.scop	Parsers and API for SCOP, Structural Classification of Proteins.

Uses of ResidueRange in org.biojava.nbio.structure

Subclasses of ResidueRange in org.biojava.nbio.structure

Modifier and Type	Class and Description
class	AugmentedResidueRange Created by douglas on 1/23/15.
class	ResidueRangeAndLength A chain, a start residue, and an end residue.

Methods in org.biojava.nbio.structure that return ResidueRange

Modifier and Type	Method and Description
static ResidueRange	ResidueRange.parse(java.lang.String s) Parse the residue range from a string.

Methods in org.biojava.nbio.structure that return types with arguments of type ResidueRange

Modifier and Type	Method and Description
java.util.List<ResidueRange>	SubstructureIdentifier.getResidueRanges()
java.util.List<ResidueRange>	StructureImpl.getResidueRanges() Deprecated.
java.util.List<? extends ResidueRange>	Structure.getResidueRanges() Deprecated. From BioJava 4.2, use getStructureIdentifier().toCanonical().getResidueRanges()
static java.util.List<ResidueRange>	ResidueRange.parseMultiple(java.util.List<java.lang.String> ranges)
static java.util.List<ResidueRange>	ResidueRange.parseMultiple(java.lang.String s)

Methods in org.biojava.nbio.structure with parameters of type ResidueRange

Modifier and Type	Method and Description
static java.util.Iterator<ResidueNumber>	ResidueRange.multiIterator(AtomPositionMap map, ResidueRange... rrs) Returns a new Iterator over every ResidueNumber in the list of ResidueRanges.
ResidueRangeAndLength	AtomPositionMap.trimToValidResidues(ResidueRange rr) Trims a residue range so that both endpoints are contained in this map.

Method parameters in org.biojava.nbio.structure with type arguments of type ResidueRange

Modifier and Type	Method and Description
static java.util.Iterator<ResidueNumber>	ResidueRange.multiIterator(AtomPositionMap map, java.util.List<? extends ResidueRange> rrs) Returns a new Iterator over every ResidueNumber in the list of ResidueRanges.
static java.lang.String	ResidueRange.toString(java.util.List<? extends ResidueRange> ranges)
static java.util.List<java.lang.String>	ResidueRange.toStrings(java.util.List<? extends ResidueRange> ranges)

Constructor parameters in org.biojava.nbio.structure with type arguments of type ResidueRange

Constructor and Description
SubstructureIdentifier(java.lang.String pdbId, java.util.List<ResidueRange> ranges) Create a new identifier based on a set of ranges.

Uses of ResidueRange in org.biojava.nbio.structure.domain

Constructor parameters in org.biojava.nbio.structure.domain with type arguments of type ResidueRange

Constructor and Description
PDPDomain(java.lang.String pdpDomainName, java.util.List<ResidueRange> ranges)

Uses of ResidueRange in org.biojava.nbio.structure.ecod

Methods in org.biojava.nbio.structure.ecod that return types with arguments of type ResidueRange

Modifier and Type	Method and Description
java.util.List<ResidueRange>	EcodDomain.getResidueRanges()

Uses of ResidueRange in org.biojava.nbio.structure.scop

Methods in org.biojava.nbio.structure.scop that return types with arguments of type ResidueRange

Modifier and Type	Method and Description
java.util.List<ResidueRange>	ScopDomain.getResidueRanges()