org.biojava.nbio.structure.io.mmtf

Class MmtfSummaryDataBean

java.lang.Object

org.biojava.nbio.structure.io.mmtf.MmtfSummaryDataBean

public class MmtfSummaryDataBean
extends java.lang.Object

Class to store the summary data for a given structure.

Author:

Anthony Bradley

Constructor Summary

Constructors

Constructor and Description
MmtfSummaryDataBean()

Method Summary

Modifier and Type	Method and Description
java.util.List<Atom>	getAllAtoms()
java.util.List<Chain>	getAllChains()
java.util.Map<java.lang.String,java.lang.Integer>	getChainIdToIndexMap()
int	getNumBonds()
void	setAllAtoms(java.util.List<Atom> allAtoms)
void	setAllChains(java.util.List<Chain> allChains)
void	setChainIdToIndexMap(java.util.Map<java.lang.String,java.lang.Integer> chainIdToIndexMap)
void	setNumBonds(int numBonds)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MmtfSummaryDataBean

public MmtfSummaryDataBean()

Method Detail

getAllChains

public java.util.List<Chain> getAllChains()

Returns:

the list of chains (in all models) in the structure

setAllChains

public void setAllChains(java.util.List<Chain> allChains)

Parameters:

allChains - the list of chains (in all models) in the structure

getAllAtoms

public java.util.List<Atom> getAllAtoms()

Returns:

the list of atoms (in all models) in the structure

setAllAtoms

public void setAllAtoms(java.util.List<Atom> allAtoms)

Parameters:

allAtoms - the list of atoms (in all models) in the structure

getNumBonds

public int getNumBonds()

Returns:

the number of covalent bonds in the structure

setNumBonds

public void setNumBonds(int numBonds)

Parameters:

numBonds - the number of covalent bonds in the structure

getChainIdToIndexMap

public java.util.Map<java.lang.String,java.lang.Integer> getChainIdToIndexMap()

Returns:

the map of chain ids (strings asymId) to the index of that chain in the allChains list. This only applies for the first model in the structure.

setChainIdToIndexMap

public void setChainIdToIndexMap(java.util.Map<java.lang.String,java.lang.Integer> chainIdToIndexMap)

Parameters:

chainIdToIndexMap - the map of chain ids (strings asymId) to the index of that chain in the allChains list. This only applies for the first model in the structure.