Uses of Class
org.biojava.nbio.structure.scop.ScopDescription

Packages that use ScopDescription

Package	Description
org.biojava.nbio.structure.scop	Parsers and API for SCOP, Structural Classification of Proteins.
org.biojava.nbio.structure.scop.server

Uses of ScopDescription in org.biojava.nbio.structure.scop

Methods in org.biojava.nbio.structure.scop that return ScopDescription

Modifier and Type	Method and Description
ScopDescription	RemoteScopInstallation.getScopDescriptionBySunid(int sunid)
ScopDescription	ScopDatabase.getScopDescriptionBySunid(int sunid) Return the SCOP description for a node in the hierarchy by its "sunid" id.
ScopDescription	ScopInstallation.getScopDescriptionBySunid(int sunid)
ScopDescription	CachedRemoteScopInstallation.getScopDescriptionBySunid(int sunid)

Methods in org.biojava.nbio.structure.scop that return types with arguments of type ScopDescription

Modifier and Type	Method and Description
java.util.List<ScopDescription>	RemoteScopInstallation.filterByClassificationId(java.lang.String query)
java.util.List<ScopDescription>	ScopDatabase.filterByClassificationId(java.lang.String query) Get all scop descriptions that start with a classification ID, e.g.
java.util.List<ScopDescription>	ScopInstallation.filterByClassificationId(java.lang.String query)
java.util.List<ScopDescription>	CachedRemoteScopInstallation.filterByClassificationId(java.lang.String query)
java.util.List<ScopDescription>	RemoteScopInstallation.filterByDescription(java.lang.String query)
java.util.List<ScopDescription>	ScopDatabase.filterByDescription(java.lang.String query) Get all scop descriptions that start with a certain name.
java.util.List<ScopDescription>	ScopInstallation.filterByDescription(java.lang.String query)
java.util.List<ScopDescription>	CachedRemoteScopInstallation.filterByDescription(java.lang.String query)
java.util.List<ScopDescription>	RemoteScopInstallation.getByCategory(ScopCategory category)
java.util.List<ScopDescription>	ScopDatabase.getByCategory(ScopCategory category) Get all records of a particular classification.
java.util.List<ScopDescription>	ScopInstallation.getByCategory(ScopCategory category)
java.util.List<ScopDescription>	CachedRemoteScopInstallation.getByCategory(ScopCategory category)

Uses of ScopDescription in org.biojava.nbio.structure.scop.server

Methods in org.biojava.nbio.structure.scop.server that return ScopDescription

Modifier and Type	Method and Description
static ScopDescription	XMLUtil.getScopDescriptionFromXML(java.lang.String xml)

Methods in org.biojava.nbio.structure.scop.server that return types with arguments of type ScopDescription

Modifier and Type	Method and Description
java.util.List<ScopDescription>	ScopDescriptions.getScopDescription()

Methods in org.biojava.nbio.structure.scop.server with parameters of type ScopDescription

Modifier and Type	Method and Description
static java.lang.String	XMLUtil.getScopDescriptionXML(ScopDescription desc)

Method parameters in org.biojava.nbio.structure.scop.server with type arguments of type ScopDescription

Modifier and Type	Method and Description
static java.lang.String	XMLUtil.getScopDescriptionsXML(java.util.List<ScopDescription> descriptions)
void	ScopDescriptions.setScopDescription(java.util.List<ScopDescription> descriptions)