Uses of Class
org.biojava.nbio.structure.secstruc.SecStrucState

Packages that use SecStrucState

Package	Description
org.biojava.nbio.structure.secstruc

Uses of SecStrucState in org.biojava.nbio.structure.secstruc

Methods in org.biojava.nbio.structure.secstruc that return types with arguments of type SecStrucState

Modifier and Type	Method and Description
java.util.List<SecStrucState>	SecStrucCalc.calculate(Structure s, boolean assign) Predicts the secondary structure of this Structure object, using a DSSP implementation.
static java.util.List<SecStrucState>	DSSPParser.fetch(java.lang.String pdb, Structure structure, boolean assign) Fetch and parse the DSSP file of the specified pdb code from the PDB web server and return the secondary structure annotation as a List of SecStrucState objects.
static java.util.List<SecStrucState>	DSSPParser.parseFile(java.lang.String dsspPath, Structure structure, boolean assign) Parse a DSSP output file and return the secondary structure annotation as a List of SecStrucState objects.
static java.util.List<SecStrucState>	DSSPParser.parseInputStream(java.io.InputStream dsspIs, Structure structure, boolean assign) Parse a DSSP output file and return the secondary structure annotation as a List of SecStrucState objects.
static java.util.List<SecStrucState>	DSSPParser.parseString(java.lang.String dsspOut, Structure structure, boolean assign) Parse a DSSP format String and return the secondary structure annotation as a List of SecStrucState objects.