Deprecated API

Contents

• Methods

Methods

Method	Description
org.biojava.nbio.structure.contact.Grid.getContacts()	use Grid.getAtomContacts() instead
org.biojava.nbio.structure.PDBHeader.getDescription()	will be removed later. Use PDBHeader.getKeywords() if you use description to keep the keywords.
org.biojava.nbio.structure.PDBHeader.setDescription(String)	will be removed later. Use PDBHeader.getKeywords() if you use description to keep the keywords.
org.biojava.nbio.structure.Structure.getPdbId()	From BioJava 4.2, use Structure.getPDBCode() or getStructureIdentifier().toCanonical().getPdbId()
org.biojava.nbio.structure.StructureImpl.getPdbId()
org.biojava.nbio.structure.StructureTools.getReducedStructure(Structure, String)	Use StructureIdentifier.reduce(Structure) instead (v. 4.2.0)
org.biojava.nbio.structure.symmetry.internal.CESymmParameters.setRefineResult(boolean)