org.biojava.nbio.survival.cox

Class CoxCoefficient

java.lang.Object

org.biojava.nbio.survival.cox.CoxCoefficient

public class CoxCoefficient
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor and Description
CoxCoefficient()

Method Summary

Methods

Modifier and Type	Method and Description
static String	fmt(Double d, int precision, int pad)
double	getCoeff()
double	getHazardRatio()
double	getHazardRatioHiCI()
double	getHazardRatioLoCI()
String	getHRText()
double	getMean()
String	getName()
double	getPvalue()
double	getRobustStdError()
double	getStandardDeviation()
double	getStdError()
double	getZ()
void	setCoeff(double coeff)
void	setHazardRatio(double hazardRatio)
void	setHazardRatioHiCI(double hazardRatioHiCI)
void	setHazardRatioLoCI(double hazardRatioLoCI)
void	setMean(double mean)
void	setName(String name)
void	setPvalue(double pvalue)
void	setRobustStdError(double robustStdError)
void	setStandardDeviation(double standardDeviation)
void	setStdError(double stdError)
void	setZ(double z)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CoxCoefficient

public CoxCoefficient()

Method Detail

toString

public String toString()

Overrides:

toString in class Object

getHRText

public String getHRText()

Returns:

getName

public String getName()

Returns:

the name

getCoeff

public double getCoeff()

Returns:

the coeff

getStdError

public double getStdError()

Returns:

the stdError

getRobustStdError

public double getRobustStdError()

Returns:

the robustStdError

getZ

public double getZ()

Returns:

the z

getHazardRatio

public double getHazardRatio()

Returns:

the hazardRatio

getHazardRatioLoCI

public double getHazardRatioLoCI()

Returns:

the hazardRatioLoCI

getHazardRatioHiCI

public double getHazardRatioHiCI()

Returns:

the hazardRatioHiCI

getPvalue

public double getPvalue()

Returns:

the pvalue

getMean

public double getMean()

Returns:

the mean

getStandardDeviation

public double getStandardDeviation()

Returns:

the standardDeviation

setName

public void setName(String name)

Parameters:

name - the name to set

setCoeff

public void setCoeff(double coeff)

Parameters:

coeff - the coeff to set

setStdError

public void setStdError(double stdError)

Parameters:

stdError - the stdError to set

setRobustStdError

public void setRobustStdError(double robustStdError)

Parameters:

robustStdError - the robustStdError to set

setZ

public void setZ(double z)

Parameters:

z - the z to set

setHazardRatio

public void setHazardRatio(double hazardRatio)

Parameters:

hazardRatio - the hazardRatio to set

setHazardRatioLoCI

public void setHazardRatioLoCI(double hazardRatioLoCI)

Parameters:

hazardRatioLoCI - the hazardRatioLoCI to set

setHazardRatioHiCI

public void setHazardRatioHiCI(double hazardRatioHiCI)

Parameters:

hazardRatioHiCI - the hazardRatioHiCI to set

setPvalue

public void setPvalue(double pvalue)

Parameters:

pvalue - the pvalue to set

setMean

public void setMean(double mean)

Parameters:

mean - the mean to set

setStandardDeviation

public void setStandardDeviation(double standardDeviation)

Parameters:

standardDeviation - the standardDeviation to set

fmt

public static String fmt(Double d,
         int precision,
         int pad)

Parameters:

d -

precision -

pad -

Returns: