org.biojava.nbio.survival.cox

Class CoxVariables

java.lang.Object

org.biojava.nbio.survival.cox.CoxVariables

public class CoxVariables
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor and Description
CoxVariables(String cohortName, String geneSet, String genes)

Method Summary

Methods

Modifier and Type	Method and Description
String	encodeFileURL(String file)
static String	fmt(Double d, int precision, int pad)
String	getCohortName()
CoxInfo	getCoxInfo(String name)
LinkedHashMap<String,CoxInfo>	getCoxInfoHashMap()
String	getGenes()
String	getGeneSet()
int	getUniqueID() Need a unique id from String
void	putCoxInfo(String name, CoxInfo coxInfo)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CoxVariables

public CoxVariables(String cohortName,
            String geneSet,
            String genes)

Parameters:

cohortName -

geneSet -

genes -

Method Detail

getUniqueID

public int getUniqueID()

Need a unique id from String

Returns:

putCoxInfo

public void putCoxInfo(String name,
              CoxInfo coxInfo)

Parameters:

name -

coxInfo -

getCoxInfo

public CoxInfo getCoxInfo(String name)

Parameters:

name -

Returns:

encodeFileURL

public String encodeFileURL(String file)

Parameters:

file -

Returns:

fmt

public static String fmt(Double d,
         int precision,
         int pad)

Parameters:

d -

precision -

pad -

Returns:

toString

public String toString()

Overrides:

toString in class Object

getCohortName

public String getCohortName()

Returns:

the cohortName

getGeneSet

public String getGeneSet()

Returns:

the geneSet

getGenes

public String getGenes()

Returns:

the genes

getCoxInfoHashMap

public LinkedHashMap<String,CoxInfo> getCoxInfoHashMap()

Returns:

the coxInfoHashMap