All Classes
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All Classes Interface Summary Class Summary Enum Summary Class Description AgScore CensorStatus CensorStatusSelect ChangeValue ChiSq Cholesky2 Chsolve2 ClinicalMetaDataOutcome CompactCharSequence http://www.javamex.com/tutorials/memory/ascii_charsequence.shtmlCoxCC CoxCoefficient CoxComparatorInterface CoxHelper The CoxHelper class is provided to start with a tab delimited file in a similar process in R and return the results as a CoxInfo class.CoxInfo Holds the results of a cox analysis where calling dump(), toString() will give an output similar to RCoxMart CoxMethod CoxR This is a port of the R survival code used for doing Cox Regression.CoxScore CoxVariables CoxVariablesOverallModelFitComparator CoxVariablesVariableComparator DiscreteQuantizerInterface ExpressionFigure GroupResults HeaderInfo KaplanMeierFigure KMFigureInfo Matrix *********************************************************************** Compilation: javac Matrix.java Execution: java Matrix A bare-bones collection of static methods for manipulating matrices.MeanModelComparator MeanQuantizer MetaDataInfo NumbersAtRiskPanel ResidualsCoxph ResidualsCoxph.Type RiskInfo StdArrayIO Standard array IO.StrataInfo Information needed to represent a survival curveSurvFitInfo Contains info for graphing km figuresSurvFitKM Ported from survfitKM.S When combining multiple entries with same time not sure how the weighting adds upSurvFitKM.ConfLower SurvFitKM.ConfType SurvFitKM.Error SurvFitKM.Method SurvivalInfo Data class to represent a single sample where time and event/censor status is required Additionally each variable and data associated with that variable.SurvivalInfoComparator SurvivalInfoHelper Used to work with SurvivalInfoSurvivalInfoIndex Not used and probably should be deletedSurvivalInfoValueComparator WaldTest WaldTestInfo WorkSheet Need to handle very large spreadsheets of expression data so keep memory footprint low