Uses of Class
org.biojava.nbio.survival.cox.CoxInfo

Packages that use CoxInfo

Package	Description
org.biojava.nbio.survival.cox
org.biojava.nbio.survival.cox.stats
org.biojava.nbio.survival.kaplanmeier.figure

Uses of CoxInfo in org.biojava.nbio.survival.cox

Methods in org.biojava.nbio.survival.cox that return CoxInfo

Modifier and Type	Method and Description
CoxInfo	CoxVariables.getCoxInfo(java.lang.String name)
CoxInfo	CoxR.process(java.util.ArrayList<java.lang.String> variables, java.util.ArrayList<SurvivalInfo> DataT, boolean useStrata, boolean useWeighted, boolean robust, boolean cluster)
CoxInfo	CoxR.process(java.util.ArrayList<java.lang.String> variables, java.util.ArrayList<SurvivalInfo> data, int maxiter, CoxMethod method, double eps, double toler, double[] beta, int doscale, boolean useStrata, boolean useWeighted, boolean robust, boolean cluster)
static CoxInfo	CoxHelper.process(java.lang.String datafile, java.lang.String timeColumn, java.lang.String statusColumn, java.lang.String weightColumn, java.lang.String strataColumn, java.lang.String clusterColumn, java.util.ArrayList<java.lang.String> variables, boolean useStrata, boolean useWeights)
static CoxInfo	CoxHelper.process(WorkSheet worksheet, java.lang.String timeColumn, java.lang.String statusColumn, java.lang.String weightColumn, java.lang.String strataColumn, java.lang.String clusterColumn, java.util.ArrayList<java.lang.String> variables, boolean useStrata, boolean useWeights)

Methods in org.biojava.nbio.survival.cox that return types with arguments of type CoxInfo

Modifier and Type	Method and Description
java.util.LinkedHashMap<java.lang.String,CoxInfo>	CoxVariables.getCoxInfoHashMap()

Methods in org.biojava.nbio.survival.cox with parameters of type CoxInfo

Modifier and Type	Method and Description
static void	CoxR.calculateWaldTestInfo(CoxInfo ci)
void	CoxR.coxphfitSCleanup(CoxInfo ci, boolean useWeighted, boolean robust, java.util.ArrayList<java.lang.String> cluster)
static void	CoxCC.process(CoxInfo ci)
static double[][]	ResidualsCoxph.process(CoxInfo ci, ResidualsCoxph.Type type, boolean useWeighted, java.util.ArrayList<java.lang.String> cluster)
static double[][]	CoxScore.process(CoxMethod method, java.util.ArrayList<SurvivalInfo> survivalInfoList, CoxInfo coxInfo, boolean useStrata)
void	CoxVariables.putCoxInfo(java.lang.String name, CoxInfo coxInfo)

Uses of CoxInfo in org.biojava.nbio.survival.cox.stats

Methods in org.biojava.nbio.survival.cox.stats with parameters of type CoxInfo

Modifier and Type	Method and Description
static double[][]	AgScore.process(CoxMethod method, java.util.ArrayList<SurvivalInfo> survivalInfoList, CoxInfo coxInfo, boolean useStrata)

Uses of CoxInfo in org.biojava.nbio.survival.kaplanmeier.figure

Methods in org.biojava.nbio.survival.kaplanmeier.figure with parameters of type CoxInfo

Modifier and Type	Method and Description
void	KaplanMeierFigure.setCoxInfo(java.util.ArrayList<java.lang.String> title, CoxInfo ci, java.lang.String strataVariable, java.util.LinkedHashMap<java.lang.String,java.lang.String> legendMap, java.lang.Boolean useWeighted)