Uses of Class
org.biojava.nbio.survival.data.WorkSheet

Packages that use WorkSheet

Package	Description
org.biojava.nbio.survival.cox
org.biojava.nbio.survival.data
org.biojava.nbio.survival.kaplanmeier.figure
org.biojava.nbio.survival.kaplanmeier.metadata

Uses of WorkSheet in org.biojava.nbio.survival.cox

Methods in org.biojava.nbio.survival.cox with parameters of type WorkSheet

Modifier and Type	Method and Description
static CoxInfo	CoxHelper.process(WorkSheet worksheet, java.lang.String timeColumn, java.lang.String statusColumn, java.lang.String weightColumn, java.lang.String strataColumn, java.lang.String clusterColumn, java.util.ArrayList<java.lang.String> variables, boolean useStrata, boolean useWeights)

Uses of WorkSheet in org.biojava.nbio.survival.data

Methods in org.biojava.nbio.survival.data that return WorkSheet

Modifier and Type	Method and Description
static WorkSheet	WorkSheet.getCopyWorkSheet(WorkSheet copyWorkSheet) Create a copy of a worksheet.
static WorkSheet	WorkSheet.getCopyWorkSheetSelectedRows(WorkSheet copyWorkSheet, java.util.ArrayList<java.lang.String> rows) Create a copy of a worksheet.
WorkSheet	WorkSheet.getLogScale(double base) Get the log scale of this worksheet where a zero value will be set to .1 as Log(0) is undefined
WorkSheet	WorkSheet.getLogScale(double base, double zeroValue) Get the log scale of this worksheet
static WorkSheet	WorkSheet.readCSV(java.io.File f, char delimiter)
static WorkSheet	WorkSheet.readCSV(java.io.InputStream is, char delimiter) Read a CSV/Tab delimited file where you pass in the delimiter
static WorkSheet	WorkSheet.readCSV(java.lang.String fileName, char delimiter) Read a CSV/Tab delimitted file where you pass in the delimiter
WorkSheet	WorkSheet.swapRowAndColumns() Swap the row and columns returning a new worksheet
static WorkSheet	WorkSheet.unionWorkSheetsRowJoin(java.lang.String w1FileName, java.lang.String w2FileName, char delimitter, boolean secondSheetMetaData) Combine two work sheets where you join based on rows.
static WorkSheet	WorkSheet.unionWorkSheetsRowJoin(WorkSheet w1, WorkSheet w2, boolean secondSheetMetaData) * Combine two work sheets where you join based on rows.

Methods in org.biojava.nbio.survival.data with parameters of type WorkSheet

Modifier and Type	Method and Description
void	WorkSheet.appendWorkSheetColumns(WorkSheet worksheet) Add columns from a second worksheet to be joined by common row.
void	WorkSheet.appendWorkSheetRows(WorkSheet worksheet) Add rows from a second worksheet to be joined by common column.
static WorkSheet	WorkSheet.getCopyWorkSheet(WorkSheet copyWorkSheet) Create a copy of a worksheet.
static WorkSheet	WorkSheet.getCopyWorkSheetSelectedRows(WorkSheet copyWorkSheet, java.util.ArrayList<java.lang.String> rows) Create a copy of a worksheet.
static WorkSheet	WorkSheet.unionWorkSheetsRowJoin(WorkSheet w1, WorkSheet w2, boolean secondSheetMetaData) * Combine two work sheets where you join based on rows.

Uses of WorkSheet in org.biojava.nbio.survival.kaplanmeier.figure

Methods in org.biojava.nbio.survival.kaplanmeier.figure with parameters of type WorkSheet

Modifier and Type	Method and Description
CensorStatus	CensorStatusSelect.select(WorkSheet worksheet, java.lang.String row)

Uses of WorkSheet in org.biojava.nbio.survival.kaplanmeier.metadata

Methods in org.biojava.nbio.survival.kaplanmeier.metadata with parameters of type WorkSheet

Modifier and Type	Method and Description
void	DiscreteQuantizerInterface.process(WorkSheet worksheet, java.lang.String column)
void	MeanQuantizer.process(WorkSheet worksheet, java.lang.String column)
static void	ClinicalMetaDataOutcome.process(WorkSheet worksheet, java.lang.String sensorMapColumn, java.util.LinkedHashMap<java.lang.String,java.lang.String> censorMap, java.lang.String timeColumn, java.lang.Double timeScale, java.util.ArrayList<MetaDataInfo> metaDataInfoList)
void	MetaDataInfo.setDiscreteValues(WorkSheet worksheet)