All Classes and Interfaces
Class
Description
http://www.javamex.com/tutorials/memory/ascii_charsequence.shtml
The CoxHelper class is provided to start with a tab delimited file in a similar process in R and return the results as a CoxInfo class.
Holds the results of a cox analysis where calling dump(), toString() will give an output similar to R
This is a port of the R survival code used for doing Cox Regression.
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Compilation: javac Matrix.java Execution: java Matrix
A bare-bones collection of static methods for manipulating matrices.
Standard array IO.
Information needed to represent a survival curve
Contains info for graphing km figures
Ported from survfitKM.S When combining multiple entries with same time not
sure how the weighting adds up
Data class to represent a single sample where time and event/censor status is required
Additionally each variable and data associated with that variable.
Used to work with SurvivalInfo
Not used and probably should be deleted
Need to handle very large spreadsheets of expression data so keep memory
footprint low