Uses of Class
org.biojava3.core.exceptions.ParserException

Packages that use ParserException

org.biojava3.core.sequence.io.util
org.biojava3.core.sequence.location

Uses of ParserException in org.biojava3.core.sequence.io.util

Methods in org.biojava3.core.sequence.io.util that throw ParserException

static List<String>	IOUtils.getList(BufferedReader br) Returns the contents of a buffered reader as a list of strings
static List<String>	IOUtils.getList(File file) Delegates to IOUtils.getList(InputStream) by wrapping the File in a valid stream.
static List<String>	IOUtils.getList(InputStream is) Delegates to IOUtils.getList(BufferedReader) by wrapping the InputStream in a valid reader.
static InputStream	IOUtils.openFile(File file) For a filename this code will check the extension of the file for a .gz extension.
static void	IOUtils.processReader(BufferedReader br, IOUtils.ReaderProcessor processor) Takes in a reader and a processor, reads every line from the given file and then invokes the processor.

Uses of ParserException in org.biojava3.core.sequence.location

Methods in org.biojava3.core.sequence.location that throw ParserException

Location	InsdcParser.parse(Reader reader) Reader based version of the parse methods.
protected List<Location>	InsdcParser.parse(Reader reader, Strand strand)
Location	InsdcParser.parse(String locationString) Main method for parsing a location from a String instance