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| Packages that use CDSSequence | |
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| org.biojava3.core.sequence | |
| Uses of CDSSequence in org.biojava3.core.sequence |
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| Methods in org.biojava3.core.sequence that return CDSSequence | |
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CDSSequence |
TranscriptSequence.addCDS(AccessionID accession,
int begin,
int end,
int phase)
Add a Coding Sequence region with phase to the transcript sequence |
CDSSequence |
TranscriptSequence.removeCDS(String accession)
Remove a CDS or coding sequence from the transcript sequence |
| Methods in org.biojava3.core.sequence that return types with arguments of type CDSSequence | |
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LinkedHashMap<String,CDSSequence> |
TranscriptSequence.getCDSSequences()
Get the CDS sequences that have been added to the TranscriptSequences |
| Methods in org.biojava3.core.sequence with parameters of type CDSSequence | |
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int |
CDSComparator.compare(CDSSequence o1,
CDSSequence o2)
Used to sort two CDSSequences where Negative Strand makes it tough |
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