org.biojava3.core.sequence.compound
Class AmbiguityDNACompoundSet

java.lang.Object
  org.biojava3.core.sequence.template.AbstractCompoundSet<C>
      org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>
          org.biojava3.core.sequence.compound.DNACompoundSet
              org.biojava3.core.sequence.compound.AmbiguityDNACompoundSet

All Implemented Interfaces:

CompoundSet<NucleotideCompound>

public class AmbiguityDNACompoundSet
extends DNACompoundSet

Author:

Andy Yates

Constructor Summary

AmbiguityDNACompoundSet()

Method Summary

static AmbiguityDNACompoundSet

getDNACompoundSet()

Methods inherited from class org.biojava3.core.sequence.compound.DNACompoundSet

newNucleotideCompound

Methods inherited from class org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet

addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava3.core.sequence.template.AbstractCompoundSet

addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, isCompoundStringLengthEqual, verifySequence

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AmbiguityDNACompoundSet

public AmbiguityDNACompoundSet()

Method Detail

getDNACompoundSet

public static AmbiguityDNACompoundSet getDNACompoundSet()