org.biojava3.core.sequence.features
Class DBReferenceInfo

java.lang.Object
  org.biojava3.core.sequence.features.DBReferenceInfo

public class DBReferenceInfo
extends Object

If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by. This is a place holder for the alternative source database and the id for the same protein. Currently implement when the UniprotProxySequenceReader is used to load a protein sequence

Author:

Scooter Willis

Constructor Summary

DBReferenceInfo(String database, String id)
The source database and id

Method Summary

void	addProperty(String type, String value) Add a property and type to associate with this DBReferenceInfo
String	getDatabase()
String	getId()
LinkedHashMap<String,String>	getProperties() Get the properties
void	setDatabase(String database)
void	setId(String id)
void	setProperties(LinkedHashMap<String,String> properties)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBReferenceInfo

public DBReferenceInfo(String database,
                       String id)

The source database and id

Parameters:

database -

id -

Method Detail

addProperty

public void addProperty(String type,
                        String value)

Add a property and type to associate with this DBReferenceInfo

Parameters:

type -

value -

getProperties

public LinkedHashMap<String,String> getProperties()

Get the properties

Returns:

the properties

setProperties

public void setProperties(LinkedHashMap<String,String> properties)

Parameters:

properties - the properties to set

getDatabase

public String getDatabase()

Returns:

the database

setDatabase

public void setDatabase(String database)

Parameters:

database - the database to set

getId

public String getId()

Returns:

the id

setId

public void setId(String id)

Parameters:

id - the id to set