Uses of Interface
org.biojava3.core.sequence.io.template.FastaHeaderFormatInterface

Packages that use FastaHeaderFormatInterface

org.biojava3.core.sequence.io

Uses of FastaHeaderFormatInterface in org.biojava3.core.sequence.io

Classes in org.biojava3.core.sequence.io that implement FastaHeaderFormatInterface

class

GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound> We store the original header if the sequence is parsed from a fasta file and will use that exact sequence if we write out the sequences to a fasta file.

Constructors in org.biojava3.core.sequence.io with parameters of type FastaHeaderFormatInterface

FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase)

FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase, int lineLength)

FastaWriter(OutputStream os, Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat)
Use default line length of 60

FastaWriter(OutputStream os, Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat, int lineLength)
Set custom lineLength