|
||||||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||||
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence | |
|---|---|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| Accessioned
Indicates an entity is accessioned |
|
| Compound
|
|
| CompoundSet
|
|
| LightweightProfile
Defines a minimal data structure for reading and writing a sequence alignment. |
|
| LightweightProfile.StringFormat
List of output formats. |
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| SequenceView
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.compound | |
|---|---|
| AbstractCompound
The details of a Compound |
|
| AbstractCompoundSet
|
|
| AbstractNucleotideCompoundSet
|
|
| ComplementCompound
|
|
| Compound
|
|
| CompoundSet
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.edits | |
|---|---|
| Compound
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.features | |
|---|---|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| Compound
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io | |
|---|---|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| Compound
|
|
| CompoundSet
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io.template | |
|---|---|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| Compound
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.io.util | |
|---|---|
| Compound
|
|
| CompoundSet
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.loader | |
|---|---|
| Accessioned
Indicates an entity is accessioned |
|
| Compound
|
|
| CompoundSet
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| SequenceReader
|
|
| SequenceView
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.location | |
|---|---|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| Accessioned
Indicates an entity is accessioned |
|
| Compound
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.location.template | |
|---|---|
| Accessioned
Indicates an entity is accessioned |
|
| Compound
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.storage | |
|---|---|
| Accessioned
Indicates an entity is accessioned |
|
| Compound
|
|
| CompoundSet
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| SequenceReader
|
|
| SequenceView
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.template | |
|---|---|
| AbstractCompoundSet
|
|
| AbstractSequence
The base class for DNA, RNA and Protein sequences. |
|
| AbstractSequence.AnnotationType
|
|
| Accessioned
Indicates an entity is accessioned |
|
| ComplementCompound
|
|
| Compound
|
|
| CompoundSet
|
|
| CompoundTranslator
|
|
| LightweightProfile.StringFormat
List of output formats. |
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| SequenceReader
|
|
| SequenceView
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.transcription | |
|---|---|
| AbstractCompoundTranslator
|
|
| Compound
|
|
| CompoundSet
|
|
| CompoundTranslator
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.sequence.views | |
|---|---|
| Accessioned
Indicates an entity is accessioned |
|
| ComplementCompound
|
|
| Compound
|
|
| CompoundSet
|
|
| ProxySequenceReader
|
|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
| SequenceProxyView
|
|
| SequenceReader
|
|
| SequenceView
|
|
| Classes in org.biojava3.core.sequence.template used by org.biojava3.core.util | |
|---|---|
| Sequence
Main interface for defining a collection of Compounds and accessing them using biological indexes |
|
|
||||||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||||