001    /*
002     *                    BioJava development code
003     *
004     * This code may be freely distributed and modified under the
005     * terms of the GNU Lesser General Public Licence.  This should
006     * be distributed with the code.  If you do not have a copy,
007     * see:
008     *
009     *      http://www.gnu.org/copyleft/lesser.html
010     *
011     * Copyright for this code is held jointly by the individual
012     * authors.  These should be listed in @author doc comments.
013     *
014     * For more information on the BioJava project and its aims,
015     * or to join the biojava-l mailing list, visit the home page
016     * at:
017     *
018     *      http://www.biojava.org/
019     *
020     * Created on 01-21-2010
021     */
022    
023    package org.biojava3.core.sequence.io.template;
024    
025    import java.util.List;
026    
027    import org.biojava3.core.sequence.template.AbstractSequence;
028    import org.biojava3.core.sequence.template.Compound;
029    import org.biojava3.core.sequence.template.ProxySequenceReader;
030    
031    /**
032     *
033     * @author Scooter Willis <willishf at gmail dot com>
034     */
035    public interface SequenceCreatorInterface<C extends Compound> {
036    /**
037     *
038     * @param sequence
039     * @param index
040     * @return
041     */
042        public AbstractSequence<C> getSequence(String sequence, long index);
043     /**
044      * 
045      * @param proxyLoader
046      * @param index
047      * @return
048      */
049        public AbstractSequence<C> getSequence(ProxySequenceReader<C> proxyLoader, long index);
050     /**
051      * 
052      * @param list
053      * @return
054      */
055        public AbstractSequence<C> getSequence(List<C> list);
056    
057    }