Deprecated API

Contents

• Interfaces
• Classes
• Fields
• Methods
• Constructors
• Annotation Type Elements

Interfaces

Interface	Description
org.scijava.platform.AppEventService	Use AppService and App instead.
org.scijava.script.CodeGenerator	To be removed in SciJava Common 3.0.0.

Classes

Class	Description
org.scijava.command.console.RunArgument	Use RunArgument instead.
org.scijava.console.ConsoleUtils	Use alternatives instead (see individual method docs).
org.scijava.platform.DefaultAppEventService	Use AppService and App instead.
org.scijava.plugin.SortablePlugin	Use AbstractRichPlugin instead.
org.scijava.script.CodeGeneratorJava	To be removed in SciJava Common 3.0.0.
org.scijava.script.console.RunScriptArgument	Use RunArgument instead.
org.scijava.script.InvocationObject	To be removed in SciJava Common 3.0.0.
org.scijava.script.ParameterObject	To be removed in SciJava Common 3.0.0.
org.scijava.ui.headlessUI.HeadlessUI	Use HeadlessUI instead.
org.scijava.util.CheckSezpoz
org.scijava.util.CombineAnnotations	Use AnnotationCombiner instead.
org.scijava.util.ConversionUtils	use ConvertService and Types
org.scijava.util.GenericUtils	Use Types instead.
org.scijava.util.Prefs	See PrefService

Fields

Field	Description
org.scijava.log.LogService.DEBUG	Use LogLevel.DEBUG.
org.scijava.log.LogService.ERROR	Use LogLevel.ERROR.
org.scijava.log.LogService.INFO	Use LogLevel.INFO.
org.scijava.log.LogService.NONE	Use LogLevel.NONE.
org.scijava.log.LogService.TRACE	Use LogLevel.TRACE.
org.scijava.log.LogService.WARN	Use LogLevel.WARN.
org.scijava.plugin.Plugin.APPLICATION_MENU_ROOT	Use UIDetails.APPLICATION_MENU_ROOT instead.
org.scijava.plugin.Plugin.CONTEXT_MENU_ROOT	Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!
org.scijava.Priority.FIRST_PRIORITY	Use Priority.FIRST instead.
org.scijava.Priority.HIGH_PRIORITY	Use Priority.HIGH instead.
org.scijava.Priority.LAST_PRIORITY	Use Priority.LAST instead.
org.scijava.Priority.LOW_PRIORITY	Use Priority.LOW instead.
org.scijava.Priority.NORMAL_PRIORITY	Use Priority.NORMAL instead.
org.scijava.Priority.VERY_HIGH_PRIORITY	Use Priority.VERY_HIGH instead.
org.scijava.Priority.VERY_LOW_PRIORITY	Use Priority.VERY_LOW instead.
org.scijava.ui.headlessUI.HeadlessUI.NAME	Use HeadlessUI.NAME instead.
org.scijava.util.CheckSezpoz.FILE_NAME
org.scijava.util.CheckSezpoz.verbose

Methods

Method	Description
org.scijava.command.CommandService.getEventService()	Use CommandService.eventService() instead.
org.scijava.command.CommandService.getModuleService()	Use CommandService.moduleService() instead.
org.scijava.console.ConsoleUtils.hasParam(LinkedList<String>)	Use AbstractConsoleArgument.getParam(LinkedList) instead.
org.scijava.console.ConsoleUtils.parseParameterString(String)	Use ParseService instead.
org.scijava.display.DisplayService.getEventService()	Use DisplayService.eventService() instead.
org.scijava.display.DisplayService.getObjectService()	Use DisplayService.objectService() instead.
org.scijava.display.DisplayService.getPluginService()	Use DisplayService.pluginService() instead.
org.scijava.event.bushe.ThreadSafeEventService.getVetoSubscribers(String)	use getVetoSubscribersToTopic instead for direct replacement, or use getVetoEventListeners to get topic and pattern matchers. In EventBus 2.0 this name will replace getVetoEventListeners() and have it's union functionality
org.scijava.input.InputService.getEventService()	Use InputService.eventService() instead.
org.scijava.io.event.DataOpenedEvent.getSource()	use IOEvent.getLocation() instead
org.scijava.io.event.DataSavedEvent.getDestination()	use IOEvent.getLocation() instead
org.scijava.io.event.IOEvent.getDescriptor()	use IOEvent.getLocation() instead
org.scijava.io.location.LocationService.getResolver(URI)	Use HandlerService.getHandler(DT) instead.
org.scijava.log.AbstractLogService.getPrefix(int)	Use LogLevel.prefix(int) instead.
org.scijava.log.CallingClassUtils.getCallingClass()	Use CallingClassUtils.getCallingClassName() instead. Warning: This method throws a IllegalStateException as soon as it comes across a class that can't be loaded with the default class loader. Inspects the stack trace to return the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.
org.scijava.module.AbstractModuleItem.loadValue()
org.scijava.module.AbstractModuleItem.saveValue(T)
org.scijava.module.Module.isResolved(String)	Use Module.isInputResolved(String) instead.
org.scijava.module.Module.setResolved(String, boolean)	Use Module.resolveInput(String) and Module.unresolveInput(String) instead.
org.scijava.module.ModuleItem.loadValue()
org.scijava.module.ModuleItem.saveValue(T)
org.scijava.object.ObjectService.getEventService()	Use ObjectService.eventService() instead.
org.scijava.platform.AppEventService.about()	Use App.about() instead.
org.scijava.platform.AppEventService.getCommands()	Tag relevant commands instead: attrs = { @Attr(name = "app-command") }
org.scijava.platform.AppEventService.prefs()	Use App.prefs() instead.
org.scijava.platform.AppEventService.quit()	Use App.quit() instead.
org.scijava.platform.DefaultAppEventService.onEvent(AppAboutEvent)
org.scijava.platform.PlatformService.getAppEventService()	Use AppService and App instead.
org.scijava.platform.PlatformService.getCommandService()	Use PlatformService.commandService() instead.
org.scijava.platform.PlatformService.getEventService()	Use PlatformService.eventService() instead.
org.scijava.plugin.Parameter.columns()	Replaced by Parameter.style().
org.scijava.plugin.PTService.getPluginService()	Use PTService.pluginService() instead.
org.scijava.prefs.DefaultPrefService.clear(String, String)
org.scijava.prefs.DefaultPrefService.getIterable(Class<?>, String)
org.scijava.prefs.DefaultPrefService.getList(Class<?>)
org.scijava.prefs.DefaultPrefService.getMap(Class<?>)
org.scijava.prefs.DefaultPrefService.putList(Class<?>, List<String>)
org.scijava.prefs.DefaultPrefService.putMap(Class<?>, Map<String, String>)
org.scijava.prefs.DefaultPrefService.remove(String, String)
org.scijava.prefs.PrefService.clear(String)	Use PrefService.remove(Class, String) or PrefService.clear(Class).
org.scijava.prefs.PrefService.get(String)	Use PrefService.get(Class, String).
org.scijava.prefs.PrefService.getBoolean(String, boolean)	Use PrefService.getBoolean(Class, String, boolean).
org.scijava.prefs.PrefService.getDouble(String, double)	Use PrefService.getDouble(Class, String, double).
org.scijava.prefs.PrefService.getFloat(String, float)	Use PrefService.getFloat(Class, String, float).
org.scijava.prefs.PrefService.getInt(String, int)	Use PrefService.getInt(Class, String, int).
org.scijava.prefs.PrefService.getIterable(Class<?>, String)	Use PrefService.getList(Class, String).
org.scijava.prefs.PrefService.getList(Class<?>)	Use PrefService.getList(Class, String).
org.scijava.prefs.PrefService.getLong(String, long)	Use PrefService.getLong(Class, String, long).
org.scijava.prefs.PrefService.getMap(Class<?>)	Use PrefService.getMap(Class, String).
org.scijava.prefs.PrefService.put(String, String)	Use PrefService.put(Class, String, String).
org.scijava.prefs.PrefService.putIterable(Class<?>, Iterable<String>, String)	Use PrefService.put(Class, String, Iterable).
org.scijava.prefs.PrefService.putList(Class<?>, List<String>, String)	Use PrefService.put(Class, String, Iterable).
org.scijava.prefs.PrefService.putMap(Class<?>, Map<String, String>, String)	Use PrefService.put(Class, String, Map).
org.scijava.prefs.PrefService.remove(String, String)	Use PrefService.remove(Class, String).
org.scijava.script.ScriptInfo.isReturnValueDeclared()	Use ScriptInfo.isReturnValueAppended() instead.
org.scijava.script.ScriptModule.getLanguage()	Use ScriptInfo.getLanguage() instead.
org.scijava.script.ScriptModule.setLanguage(ScriptLanguage)	Use ScriptInfo.setLanguage(ScriptLanguage) instead.
org.scijava.util.CheckSezpoz.check(boolean)
org.scijava.util.CheckSezpoz.checkDirectory(File)
org.scijava.util.CheckSezpoz.checkJar(File)
org.scijava.util.CheckSezpoz.fix(File, File)
org.scijava.util.CheckSezpoz.writeXMLFile(Document, File)
org.scijava.util.ClassUtils.canCast(Class<?>, Class<?>)	use Types.isAssignable(Type, Type)
org.scijava.util.ClassUtils.canConvert(Class<?>, Class<?>)	use ConversionUtils.canConvert(Class, Class)
org.scijava.util.ClassUtils.cast(Object, Class<T>)	use Types.cast(Object, Class)
org.scijava.util.ClassUtils.convert(Object, Class<T>)	use ConversionUtils.convert(Object, Class)
org.scijava.util.ClassUtils.getArrayClass(Class<?>)	Use Types.array(Class) instead.
org.scijava.util.ClassUtils.getField(String, String)	Use Types.field(java.lang.Class<?>, java.lang.String) instead.
org.scijava.util.ClassUtils.getGenericType(Field, Class<?>)	Use Types.fieldType(Field, Class) instead.
org.scijava.util.ClassUtils.getLocation(String)	Use Types.location(java.lang.Class<?>) and Types.load(java.lang.String) instead.
org.scijava.util.ClassUtils.getNonprimitiveType(Class<T>)	use Types.box(Class)
org.scijava.util.ClassUtils.getNullValue(Class<T>)	use Types.nullValue(Class)
org.scijava.util.ClassUtils.getTypes(Field, Class<?>)	Use Types.fieldType(Field, Class) and Types.raws(java.lang.reflect.Type) instead.
org.scijava.util.ClassUtils.hasClass(String)	Use Types.load(String) instead.
org.scijava.util.ClassUtils.isBoolean(Class<?>)	Use Types.isBoolean(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isByte(Class<?>)	Use Types.isByte(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isCharacter(Class<?>)	Use Types.isCharacter(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isDouble(Class<?>)	Use Types.isDouble(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isFloat(Class<?>)	Use Types.isFloat(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isInteger(Class<?>)	Use Types.isInteger(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isLong(Class<?>)	Use Types.isLong(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isNumber(Class<?>)	Use Types.isNumber(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isShort(Class<?>)	Use Types.isShort(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.isText(Class<?>)	Use Types.isText(java.lang.Class<?>) instead.
org.scijava.util.ClassUtils.loadClass(String)	Use Types.load(String) instead.
org.scijava.util.CombineAnnotations.combine()	Use AnnotationCombiner.combine(File) instead.
org.scijava.util.CombineAnnotations.getAnnotationFiles()	Use AnnotationCombiner.getAnnotationFiles() instead.
org.scijava.util.CombineAnnotations.main(String[])	Use AnnotationCombiner.main(String[]) instead.
org.scijava.util.ConversionUtils.canAssign(Class<?>, Class<?>)	use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)
org.scijava.util.ConversionUtils.canCast(Class<?>, Class<?>)	use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)
org.scijava.util.ConversionUtils.canConvert(Class<?>, Type)
org.scijava.util.ConversionUtils.cast(Object, Class<T>)	use Types.cast(java.lang.Object, java.lang.Class<T>)
org.scijava.util.ConversionUtils.convert(Object, Type)
org.scijava.util.ConversionUtils.convertToEnum(String, Class<T>)	use Types.enumValue(java.lang.String, java.lang.Class<T>)
org.scijava.util.ConversionUtils.getClass(Type)	use Types.raw(java.lang.reflect.Type)
org.scijava.util.ConversionUtils.getComponentClass(Type)	use Types.raws(java.lang.reflect.Type) and Types.component(java.lang.reflect.Type)
org.scijava.util.ConversionUtils.getNonprimitiveType(Class<T>)	use Types.box(java.lang.Class<T>)
org.scijava.util.ConversionUtils.getNullValue(Class<T>)	Use Types.nullValue(java.lang.Class<T>) instead.
org.scijava.util.ConversionUtils.getPrimitiveType(Class<T>)	use Types.unbox(java.lang.Class<T>)
org.scijava.util.ConversionUtils.setDelegateService(ConvertService, double)	This method should not be used anymore.
org.scijava.util.FileUtils.matchVersionedFilename(String)	see FileUtils.stripFilenameVersion(String)
org.scijava.util.GenericUtils.getClass(Type)	Use Types.raw(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getClasses(Type)	Use Types.raws(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getComponentClass(Type)	Use Types.component(java.lang.reflect.Type) and Types.raw(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getComponentType(Type)	Use Types.component(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getFieldClasses(Field, Class<?>)	Use Types.fieldType(Field, Class) and Types.raws(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getFieldType(Field, Class<?>)	Use Types.fieldType(Field, Class) instead.
org.scijava.util.GenericUtils.getMethodReturnClasses(Method, Class<?>)	Use Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>) and Types.raws(java.lang.reflect.Type) instead.
org.scijava.util.GenericUtils.getMethodReturnType(Method, Class<?>)	Use Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>) instead.
org.scijava.util.GenericUtils.getTypeParameter(Type, Class<?>, int)	Use Types.param(java.lang.reflect.Type, java.lang.Class<?>, int) instead.
org.scijava.util.MiscUtils.equal(Object, Object)	Use Objects.equals(Object, Object) instead.

Constructors

Constructor	Description
org.scijava.io.event.DataOpenedEvent(String, Object)	use DataOpenedEvent(Location, Object) instead
org.scijava.io.event.DataSavedEvent(String, Object)	use DataSavedEvent(Location, Object) instead
org.scijava.io.event.IOEvent(String, Object)	use IOEvent(Location, Object) instead
org.scijava.script.DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage)	Use DefaultScriptInterpreter(ScriptLanguage) instead.
org.scijava.script.ScriptFinder(ScriptService)	Use ScriptFinder(Context) instead.
org.scijava.script.ScriptLanguageIndex()
org.scijava.util.CombineAnnotations()	Use AnnotationCombiner() instead.

Annotation Type Elements

Annotation Type Element	Description
org.scijava.plugin.Parameter.columns()	Replaced by Parameter.style().
org.scijava.plugin.Plugin.APPLICATION_MENU_ROOT	Use UIDetails.APPLICATION_MENU_ROOT instead.
org.scijava.plugin.Plugin.CONTEXT_MENU_ROOT	Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!