Module org.scijava.ops.flim

Package org.scijava.ops.flim.impl

Class BayesFit.BayesFitWorker<I extends RealType<I>>

java.lang.Object

org.scijava.ops.flim.impl.AbstractFitWorker<I>

org.scijava.ops.flim.impl.AbstractSingleFitWorker<I>

org.scijava.ops.flim.impl.BayesFit.BayesFitWorker<I>

All Implemented Interfaces:

FitWorker<I>

Enclosing class:

BayesFit

public static class BayesFit.BayesFitWorker<I extends RealType<I>>
extends AbstractSingleFitWorker<I>

Nested Class Summary

Nested classes/interfaces inherited from interface org.scijava.ops.flim.FitWorker

FitWorker.FitEventHandler<I extends RealType<I>>

Field Summary

Fields inherited from class org.scijava.ops.flim.impl.AbstractSingleFitWorker

chisqBuffer, fittedBuffer, paramBuffer, residualBuffer, transBuffer

Fields inherited from class org.scijava.ops.flim.impl.AbstractFitWorker

adjFitEnd, adjFitStart, nData, nDataTotal, nParam, params, rawChisq_target, results

Constructor Summary

Constructors

Constructor	Description
BayesFitWorker(FitParams<I> params, FitResults results, Function<FitParams<I>,FitResults> rldFitter, BiFunction<Img<FloatType>,Integer,FloatType> percentileOp)

Method Summary

Modifier and Type	Method	Description
protected void	beforeFit()	A routine called before AbstractSingleFitWorker.doFit().
void	doFit()	Performs an Bayes fit.
protected AbstractSingleFitWorker<I>	duplicate(FitParams<I> params, FitResults rslts)	Make a worker of the same kind but does not share any writable buffers (thread safe) if that buffer is null.
protected void	onThreadInit()	Called on the worker thread after worker duplication.
protected boolean	runMultiThreaded()

Methods inherited from class org.scijava.ops.flim.impl.AbstractSingleFitWorker

afterFit, fitBatch, fitSingle

Methods inherited from class org.scijava.ops.flim.impl.AbstractFitWorker

nDataOut, nParamOut, populate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BayesFitWorker

public BayesFitWorker(FitParams<I> params,
                      FitResults results,
                      Function<FitParams<I>,FitResults> rldFitter,
                      BiFunction<Img<FloatType>,Integer,FloatType> percentileOp)

Method Detail

beforeFit

protected void beforeFit()

Description copied from class: AbstractSingleFitWorker

A routine called before AbstractSingleFitWorker.doFit(). Can be used to throw away the left-overs from the previous run.

Overrides:

beforeFit in class AbstractSingleFitWorker<I extends RealType<I>>

doFit

public void doFit()

Performs an Bayes fit.

Specified by:

doFit in class AbstractSingleFitWorker<I extends RealType<I>>

onThreadInit

protected void onThreadInit()

Description copied from class: AbstractSingleFitWorker

Called on the worker thread after worker duplication. Can be used to initialize thread-local globals such as Bayesian search grid parameters.

Overrides:

onThreadInit in class AbstractSingleFitWorker<I extends RealType<I>>

See Also:

onThreadInit()

duplicate

protected AbstractSingleFitWorker<I> duplicate(FitParams<I> params,
                                               FitResults rslts)

Description copied from class: AbstractSingleFitWorker

Make a worker of the same kind but does not share any writable buffers (thread safe) if that buffer is null.

Specified by:

duplicate in class AbstractSingleFitWorker<I extends RealType<I>>

Parameters:

params - the parameters

rslts - the results

Returns:

a worker of the same kind.

runMultiThreaded

protected boolean runMultiThreaded()

Overrides:

runMultiThreaded in class AbstractSingleFitWorker<I extends RealType<I>>