Module org.scijava.ops.image

Package org.scijava.ops.image.coloc.pValue

Class DefaultPValue<T extends RealType<T>,U extends RealType<U>>

java.lang.Object

org.scijava.ops.image.coloc.pValue.DefaultPValue<T,U>

All Implemented Interfaces:

Computers.Arity6<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,BiFunction<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,Double>,Integer,Dimensions,Long,PValueResult>, Consumers.Arity7<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,BiFunction<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,Double>,Integer,Dimensions,Long,PValueResult>

public class DefaultPValue<T extends RealType<T>,U extends RealType<U>>
extends Object
implements Computers.Arity6<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,BiFunction<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,Double>,Integer,Dimensions,Long,PValueResult>

This algorithm repeatedly executes a colocalization algorithm, computing a p-value. It is based on a new statistical framework published by Wang et al (2017) IEEE Signal Processing "Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach".

Implementation Note:

op names='coloc.pValue'

Constructor Summary

Constructors

Constructor	Description
DefaultPValue()

Method Summary

Modifier and Type	Method	Description
void	compute(RandomAccessibleInterval<T> image1, RandomAccessibleInterval<U> image2, BiFunction<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,Double> op, Integer nrRandomizations, Dimensions psfSize, Long seed, PValueResult output)	TODO

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.function.Computers.Arity6

accept

Methods inherited from interface org.scijava.function.Consumers.Arity7

andThen

Constructor Detail

DefaultPValue

public DefaultPValue()

Method Detail

compute

public void compute(RandomAccessibleInterval<T> image1,
                    RandomAccessibleInterval<U> image2,
                    BiFunction<RandomAccessibleInterval<T>,RandomAccessibleInterval<U>,Double> op,
                    Integer nrRandomizations,
                    Dimensions psfSize,
                    Long seed,
                    PValueResult output)

TODO

Specified by:

compute in interface Computers.Arity6<RandomAccessibleInterval<T extends RealType<T>>,RandomAccessibleInterval<U extends RealType<U>>,BiFunction<RandomAccessibleInterval<T extends RealType<T>>,RandomAccessibleInterval<U extends RealType<U>>,Double>,Integer,Dimensions,Long,PValueResult>

Parameters:

image1 - the first image

image2 - the second image

op - the op

nrRandomizations - the number of randomizations

psfSize - Size of blocks for random shufflings.

seed - the seed

output - the output