Module org.scijava.ops.image

Package org.scijava.ops.image.deconvolve

Class RichardsonLucyC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>>

java.lang.Object

org.scijava.ops.image.deconvolve.RichardsonLucyC<I,O,K,C>

Type Parameters:

I -

O -

K -

C -

All Implemented Interfaces:

Computers.Arity12<RandomAccessibleInterval<I>,RandomAccessibleInterval<K>,RandomAccessibleInterval<C>,RandomAccessibleInterval<C>,Boolean,Boolean,C,Integer,Boolean,Computers.Arity1<RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>,List<Inplaces.Arity1<RandomAccessibleInterval<O>>>,RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>, Consumers.Arity13<RandomAccessibleInterval<I>,RandomAccessibleInterval<K>,RandomAccessibleInterval<C>,RandomAccessibleInterval<C>,Boolean,Boolean,C,Integer,Boolean,Computers.Arity1<RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>,List<Inplaces.Arity1<RandomAccessibleInterval<O>>>,RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>

public class RichardsonLucyC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>>
extends Object
implements Computers.Arity12<RandomAccessibleInterval<I>,RandomAccessibleInterval<K>,RandomAccessibleInterval<C>,RandomAccessibleInterval<C>,Boolean,Boolean,C,Integer,Boolean,Computers.Arity1<RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>,List<Inplaces.Arity1<RandomAccessibleInterval<O>>>,RandomAccessibleInterval<O>,RandomAccessibleInterval<O>>

Richardson Lucy algorithm for (@link RandomAccessibleInterval) (Lucy, L. B. (1974). "An iterative technique for the rectification of observed distributions".)

Author:

Brian Northan

Implementation Note:

op names='deconvolve.richardsonLucy', priority='100.'

Constructor Summary

Constructors

Constructor	Description
RichardsonLucyC()

Method Summary

Modifier and Type	Method	Description
void	compute(RandomAccessibleInterval<I> in, RandomAccessibleInterval<K> kernel, RandomAccessibleInterval<C> fftInput, RandomAccessibleInterval<C> fftKernel, Boolean performInputFFT, Boolean performKernelFFT, C complexType, Integer maxIterations, Boolean accelerate, Computers.Arity1<RandomAccessibleInterval<O>,RandomAccessibleInterval<O>> updateOp, List<Inplaces.Arity1<RandomAccessibleInterval<O>>> iterativePostProcessingOps, RandomAccessibleInterval<O> raiExtendedEstimate, RandomAccessibleInterval<O> out)	TODO

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.function.Computers.Arity12

accept

Methods inherited from interface org.scijava.function.Consumers.Arity13

andThen

Constructor Detail

RichardsonLucyC

public RichardsonLucyC()

Method Detail

compute

public void compute(RandomAccessibleInterval<I> in,
                    RandomAccessibleInterval<K> kernel,
                    RandomAccessibleInterval<C> fftInput,
                    RandomAccessibleInterval<C> fftKernel,
                    Boolean performInputFFT,
                    Boolean performKernelFFT,
                    C complexType,
                    Integer maxIterations,
                    Boolean accelerate,
                    Computers.Arity1<RandomAccessibleInterval<O>,RandomAccessibleInterval<O>> updateOp,
                    List<Inplaces.Arity1<RandomAccessibleInterval<O>>> iterativePostProcessingOps,
                    RandomAccessibleInterval<O> raiExtendedEstimate,
                    RandomAccessibleInterval<O> out)

TODO

Specified by:

compute in interface Computers.Arity12<RandomAccessibleInterval<I extends RealType<I>>,RandomAccessibleInterval<K extends RealType<K>>,RandomAccessibleInterval<C extends ComplexType<C>>,RandomAccessibleInterval<C extends ComplexType<C>>,Boolean,Boolean,C extends ComplexType<C>,Integer,Boolean,Computers.Arity1<RandomAccessibleInterval<O extends RealType<O>>,RandomAccessibleInterval<O extends RealType<O>>>,List<Inplaces.Arity1<RandomAccessibleInterval<O extends RealType<O>>>>,RandomAccessibleInterval<O extends RealType<O>>,RandomAccessibleInterval<O extends RealType<O>>>

Parameters:

in - the input data

kernel - the kernel

fftInput - A buffer to be used to store kernel FFTs.

fftKernel - A buffer to be used to store kernel FFTs.

performInputFFT - boolean indicating that the input FFT has already been calculated. If true, the FFT will be taken on the input.

performKernelFFT - boolean indicating that the kernel FFT has already been calculated. If true, the FFT will be taken on the kernel.

complexType - An instance of the type to be used in the Fourier space.

maxIterations - Maximum number of iterations to perform.

accelerate - indicates whether or not to use acceleration

updateOp - Op that computes Richardson Lucy update, can be overridden to implement variations of the algorithm (like RichardsonLucyTV).

iterativePostProcessingOps - A list of optional constraints that are applied at the end of each iteration (ie can be used to achieve noise removal, non-circulant normalization, etc.).

raiExtendedEstimate - The current estimate, by passing in the current estimate the user can define the starting point (first guess), if no starting estimate is provided the default starting point will be the input image.

out - the output buffer